PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG032700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 249aa    MW: 26830.5 Da    PI: 5.6933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG032700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.8e-0881129354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++  r + RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  Pavir.6NG032700.1.p  81 TSKACRGKMRRDKLNDRFIELGSTLEHG---KPVKADKAAILSDATRMVIQL 129
                          56777889*******************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1175148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.86178129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.68E-679134No hitNo description
PfamPF000101.9E-582129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-584135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1186152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSLPPAPAES GGGGSPGDDW FLDCGILDDL PAAACGAFPW DASPSSSNPS VEVGSYVNTG  60
DVFKEPGSNK RLSSGSSGRP TSKACRGKMR RDKLNDRFIE LGSTLEHGKP VKADKAAILS  120
DATRMVIQLR SEAQQLKDTN GSLEEKIKEL KAEKDELCDE KQKLKLEKES LEHQMKLMTS  180
TPAYMPHPTL MPAPFPQAQL APFHPHAQAA GQKLMMPFVG YPGYPMWQFM PPSEVDTSKD  240
SEACPPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.53670.0callus| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972892.11e-158PREDICTED: transcription factor ILR3
SwissprotQ9FH374e-68ILR3_ARATH; Transcription factor ILR3
TrEMBLK3YJC01e-158K3YJC0_SETIT; Uncharacterized protein
STRINGSi014339m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.13e-47bHLH family protein